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Mydisease

السجل الرسمي أخرى

MyDisease.info MCP. Aggregated disease annotation from the BioThings ecosystem: MONDO/DOID/OMIM…

الشيفرة المصدرية الموقع التوثيق

التثبيت

أضف هذا إلى إعدادات MCP في عميلك (Claude Desktop: claude_desktop_config.json، وCursor: ‏.cursor/mcp.json، ويستخدم VS Code وغيره الصيغة نفسها «mcpServers»).

Remote (streamable-http)
Claude Code 
claude mcp add --transport http mydisease 'https://gateway.pipeworx.io/mydisease/mcp'
إعداد JSON (Claude Desktop وCursor وVS Code) 
{
    "mcpServers": {
        "mydisease": {
            "type": "http",
            "url": "https://gateway.pipeworx.io/mydisease/mcp"
        }
    }
}
NPM package @pipeworx/mcp-mydisease
Claude Code 
claude mcp add mydisease -e 'PIPEWORX_API_KEY=<your pipeworx_api_key>' -- npx -y @pipeworx/mcp-mydisease@0.2.0
إعداد JSON (Claude Desktop وCursor وVS Code) 
{
    "mcpServers": {
        "mydisease": {
            "command": "npx",
            "args": [
                "-y",
                "@pipeworx/mcp-mydisease@0.2.0"
            ],
            "env": {
                "PIPEWORX_API_KEY": "<your pipeworx_api_key>"
            }
        }
    }
}

متغيرات البيئة

  • PIPEWORX_API_KEY سري Optional Pipeworx API key. Without it calls are anonymous and capped daily; a free key raises the cap.

التوثيق

مأخوذ من ملف README للمشروع على GitHub ويُحدَّث أسبوعيًا. تفتح الروابط على GitHub.

المحتويات
  1. mcp-mydisease
  2. Tools
  3. Quick Start
  4. No MCP client? Call it over HTTP
  5. Standalone (no gateway account)
  6. Using with ask_pipeworx
  7. More
  8. License

mcp-mydisease

MyDisease.info MCP.

Part of Pipeworx — an MCP gateway connecting AI agents to 1683+ live data sources.

Tools

ToolDescription
querySearch MyDisease.info for diseases by free-text name or fielded query. Returns matching hits, each keyed by a MONDO disease id (e.g. "MONDO:0015967") with the best-matching ontology and annotation keys. Use this to resolve a disease name to canonical ontology ids before calling the "disease" tool. Free text like "diabetes" or "asthma" works; fielded queries like "mondo.label:asthma" or "disgenet.xrefs.disease_name:..." narrow the search.
diseaseFetch the full aggregated annotation object for a single disease id. Accepts MONDO ("MONDO:0015967"), DOID ("DOID:9351"), OMIM ("OMIM:125853") and other supported ontology ids. Returns cross-referenced data including MONDO ontology (labels, synonyms, xrefs, parents/children), gene-disease associations from DisGeNET, phenotypes from HPO, and chemical-disease relationships from CTD. Resolve a name to an id first via the "query" tool.
metadataReturns MyDisease.info build metadata: total disease document count, available annotation sources (MONDO, DOID, OMIM, DisGeNET, HPO, CTD), and their current release versions.

Quick Start

Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):

{
  "mcpServers": {
    "mydisease": {
      "url": "https://gateway.pipeworx.io/mydisease/mcp"
    }
  }
}
What this endpoint actually serves

tools/list at https://gateway.pipeworx.io/mydisease/mcp returns the tools in the table above plus the shared Pipeworx meta-tools — ask_pipeworx, discover_tools, search_within, remember/recall and the rest of the gateway-wide set. So the tool count you see is larger than this table: a single-pack endpoint currently lists roughly 30 shared tools alongside the pack's own. The connection's initialize response states its exact scope, and is the authoritative answer for a given day.

This is deliberate, not multiplexing by accident. The meta-tools are what let a scoped connection answer a question this pack does not cover — via ask_pipeworx, which routes across the whole catalog — without you adding a second MCP server. There is currently no way to mount a pack endpoint without them; if the extra schemas cost you more context than the routing is worth, connect to the full gateway once rather than to several pack endpoints.

Or connect to the full Pipeworx gateway to get every pack's tools listed directly, instead of just this one's:

{
  "mcpServers": {
    "pipeworx": {
      "url": "https://gateway.pipeworx.io/mcp"
    }
  }
}

Both URLs reach the same gateway and the same 1683+ data sources. The only difference is which pack's tools are listed directly; ask_pipeworx reaches all of them from either one.

No MCP client? Call it over HTTP

curl -X POST https://gateway.pipeworx.io/v1/tools/mydisease_query \
  -H 'Content-Type: application/json' \
  -d '{"query":"diabetes"}'

No account needed for the first calls. Inspect any tool: GET https://gateway.pipeworx.io/v1/tools/mydisease_query. Find one: POST https://gateway.pipeworx.io/v1/tools/search_packs with {"query":"..."}.

Standalone (no gateway account)

This package also runs as a local stdio MCP server — no Pipeworx account, no gateway round-trip:

{
  "mcpServers": {
    "mydisease": {
      "command": "npx",
      "args": ["-y", "@pipeworx/mcp-mydisease"]
    }
  }
}

Or run it directly to confirm it starts:

npx -y @pipeworx/mcp-mydisease

It speaks MCP over stdin/stdout and answers initialize/tools/list/tools/call for only this pack's tools — none of the shared meta-tools the gateway connection above adds. Same source, same tools, no ask_pipeworx routing.

Using with ask_pipeworx

Instead of calling tools directly, you can ask questions in plain English — this works on the pack endpoint above as well as on the full gateway:

ask_pipeworx({ question: "your question about Mydisease data" })

The gateway picks the right tool and fills the arguments automatically.

More

License

MIT

الأسئلة الشائعة

ما هو Mydisease؟

MyDisease.info MCP. Aggregated disease annotation from the BioThings ecosystem: MONDO/DOID/OMIM…

كيف أثبّت Mydisease؟

يعمل كخادم بعيد. في Claude Code: claude mcp add --transport http mydisease 'https://gateway.pipeworx.io/mydisease/mcp'. وفي العملاء الآخرين، الصق إعداد JSON من هذه الصفحة في إعدادات MCP الخاصة بهم.

هل يحتاج Mydisease إلى مفتاح API؟

نعم. يتطلب PIPEWORX_API_KEY، وتضبطها في إعداداته.

هل Mydisease مفتوح المصدر؟

نعم. شيفرته متاحة على GitHub بترخيص MIT.

من يصون Mydisease؟

ينشره pipeworx-io. يدرجه AI.tn لكنه لا يصونه ولا يوصي به.

من سجل MCP الرسمي. الإدراج ليس توصية: راجع شيفرة الخادم وصلاحياته قبل منحه الوصول إلى بياناتك.