PapersFlow

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Academic research MCP server for paper search, citation checks, graphs, and deep research.

What can you do with PapersFlow?

  • search
  • fetch
  • verify_citation
  • search_literature
  • find_related_papers
  • get_citation_graph
  • get_paper_neighbors
  • expand_citation_graph

Install

Add this to your client's MCP configuration (Claude Desktop: claude_desktop_config.json; Cursor: .cursor/mcp.json; VS Code and others use the same "mcpServers" shape).

Remote (streamable-http)
Claude Code
claude mcp add --transport http papersflow 'https://doxa.papersflow.ai/mcp'
JSON configuration (Claude Desktop, Cursor, VS Code)
{
    "mcpServers": {
        "papersflow": {
            "type": "http",
            "url": "https://doxa.papersflow.ai/mcp"
        }
    }
}

Documentation

From the project's README on GitHub, refreshed weekly. Links open on GitHub.

Contents
  1. papersflow-mcp
  2. Production Endpoint
  3. Public Tool Surface
  4. Documentation
  5. Gemini CLI Extension
  6. Client Setup
  7. Support And Policies
  8. Notes

papersflow-mcp

papersflow-mcp is PapersFlow's production / GA hosted MCP server for literature search, citation verification, related-paper discovery, and authenticated research workflows across Claude, Codex, Gemini, ChatGPT-style MCP apps, and other MCP clients.

Production Endpoint

  • MCP URL: https://doxa.papersflow.ai/mcp
  • OAuth protected resource metadata: https://doxa.papersflow.ai/.well-known/oauth-protected-resource
  • OAuth authorization server metadata: https://doxa.papersflow.ai/.well-known/oauth-authorization-server
  • Dynamic client registration: https://doxa.papersflow.ai/oauth/register

Public Tool Surface

  • search
  • fetch
  • verify_citation
  • search_literature
  • find_related_papers
  • get_citation_graph
  • get_paper_neighbors
  • expand_citation_graph

Authenticated and paid tools are available through PapersFlow account access and plan entitlements.

Documentation

Gemini CLI Extension

This repository also includes a root gemini-extension.json so Gemini CLI can install it as an extension wrapper around the hosted MCP server.

Official Gemini CLI flow supported by the docs:

gemini extensions install https://github.com/papersflow-ai/papersflow-mcp

The extension manifest lives at the repository root and points Gemini CLI at the hosted MCP endpoint using Gemini's remote MCP config shape.

If Gemini shows:

papersflow-mcp (from papersflow-mcp) - Disconnected (OAuth not authenticated)

that is expected until OAuth is completed inside Gemini:

/mcp auth papersflow-mcp
/mcp refresh
/mcp list

gemini extensions install installs the extension package. It does not complete OAuth during install. The browser opens when Gemini starts the remote MCP auth flow, typically via /mcp auth papersflow-mcp or the first auth-required connection attempt.

Gemini CLI references:

  • https://geminicli.com/docs/extensions/releasing/
  • https://geminicli.com/docs/extensions/reference/
  • https://geminicli.com/docs/extensions/writing-extensions/

Client Setup

Cline (VS Code)

Add PapersFlow as a remote MCP server in your Cline MCP settings:

{
  "mcpServers": {
    "papersflow": {
      "url": "https://doxa.papersflow.ai/mcp",
      "transportType": "streamable-http"
    }
  }
}

On first use, Cline will open a browser window for OAuth sign-in to your PapersFlow account. Public tools (literature search, citations, paper discovery) work immediately; authenticated tools require a PapersFlow plan.

Other Clients

Supported client paths today:

  • Codex
  • Claude Code
  • Gemini CLI
  • ChatGPT-style hosted MCP apps

The setup guide includes both command-style and config-style snippets where supported.

Support And Policies

  • Website: https://papersflow.ai
  • Privacy: https://papersflow.ai/privacy
  • Terms: https://papersflow.ai/terms
  • Support: https://papersflow.ai/contact
  • Support email: developer@papersflow.ai

Notes

  • This repository is the public documentation and submission surface for the hosted MCP service.
  • The production service is operated by PapersFlow and backed by the main PapersFlow platform.

Frequently asked questions

What is PapersFlow?

Academic research MCP server for paper search, citation checks, graphs, and deep research.

How do I install PapersFlow?

It runs as a remote server. In Claude Code: claude mcp add --transport http papersflow 'https://doxa.papersflow.ai/mcp'. For other clients, paste the JSON configuration from this page into their MCP settings.

Does PapersFlow need an API key?

Its registry entry lists no required key or secret. Some features may still need an account with the service it connects to.

Is PapersFlow open source?

Yes. Its code is on GitHub under the MIT license.

Who maintains PapersFlow?

It is published by papersflow-ai. AI.tn lists it but does not maintain or endorse it.

From the official MCP Registry. Listing is not an endorsement: review a server's code and permissions before giving it access to your data.